PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_16203
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 184aa    MW: 19869.3 Da    PI: 10.097
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_16203genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.2e-213988255
         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a+++a+++l+g
  PEQU_16203 39 HYRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDEAARNLRG 88
                69*******.**********883....5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.66E-223996IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-313997IPR001471AP2/ERF domain
SMARTSM003807.3E-3739102IPR001471AP2/ERF domain
CDDcd000187.89E-293997No hitNo description
PfamPF008474.7E-143988IPR001471AP2/ERF domain
PROSITE profilePS5103222.8133996IPR001471AP2/ERF domain
PRINTSPR003676.9E-114051IPR001471AP2/ERF domain
PRINTSPR003676.9E-116278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAVDTLRVGK GGFAAGEEKT APPSGAAGGG NGGGTKEGHY RGVRKRPWGR FAAEIRDPWK  60
KTRKWLGTFD TAEEAARAYD EAARNLRGPK AKTNFTDGDT PSSESISPPA IWTAAQWPSG  120
FADSRDLVIA TPTAGSEFSG YRFDAVEMLV RSEQEKKKIK SGAQDERIVK KPLGFDLNLP  180
PPLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A9e-203995562ATERF1
2gcc_A9e-203995562ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12334SGAAGGGNGGGT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778306.18e-69PREDICTED: ethylene-responsive transcription factor 12-like
TrEMBLW6CM955e-92W6CM95_9ASPA; MYB5 (Fragment)
STRINGGSMUA_Achr4P06660_0013e-54(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.12e-23ethylene response factor 8